#rna-seq (22 Repositories)
Ranked open-source repositories tagged with #rna-seq, scored by pull request acceptance likelihood and maintainer engagement velocity.
35.7%
8.5h
22 repositories tagged #rna-seq
yuanzhw/AI-bioworkflow
Auditable bioinformatics workflow compiler: Catalog-bound planning, Workflow IR, and validated WDL 1.0.
helicalAI/helical
A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
COMBINE-lab/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
GuyTeichman/RNAlysis
Analyze your RNA sequencing data without writing a single line of code
sequana/sequana
Sequana: a set of Snakemake NGS pipelines
COMBINE-lab/alevin-fry
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
milaboratory/mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
ablab/IsoQuant
A universal toolkit for upstream processing of long RNA reads
GoekeLab/xpore
Identification of differential RNA modifications from nanopore direct RNA sequencing
scRNA-tools/scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
oncologylab/craftgrn
Combined RNA and ATAC Footprint Training of Gene Regulatory Network
ratschlab/metagraph
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
ZJUFanLab/scCATCH
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
pachterlab/sleuth
Differential analysis of RNA-Seq
twbattaglia/RNAseq-workflow
A repository for setting up a RNAseq workflow
sdparekh/zUMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
dtm2451/dittoSeq
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
zhangyuqing/ComBat-seq
Batch effect adjustment based on negative binomial regression for RNA sequencing count data
timbitz/Whippet.jl
Lightweight and Fast; RNA-seq quantification at the event-level
saeyslab/nichenetr
NicheNet: predict active ligand-target links between interacting cells
pachterlab/kallisto
Near-optimal RNA-Seq quantification