#rna-seq (17 Repositories)

GuyTeichman/RNAlysis

Analyze your RNA sequencing data without writing a single line of code

COMBINE-lab/alevin-fry

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

COMBINE-lab/salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

timbitz/Whippet.jl

Lightweight and Fast; RNA-seq quantification at the event-level

kpatel427/YouTubeTutorials

zhangyuqing/ComBat-seq

Batch effect adjustment based on negative binomial regression for RNA sequencing count data

dtm2451/dittoSeq

Color blindness friendly visualization of single-cell and bulk RNA-sequencing data

sequana/sequana

Sequana: a set of Snakemake NGS pipelines

scRNA-tools/scRNA-tools

Table of software for the analysis of single-cell RNA-seq data.

ZJUFanLab/scCATCH

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

GoekeLab/xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing

sdparekh/zUMIs

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

twbattaglia/RNAseq-workflow

A repository for setting up a RNAseq workflow

pachterlab/sleuth

Differential analysis of RNA-Seq

oncologylab/craftgrn

Combined RNA and ATAC Footprint Training of Gene Regulatory Network

milaboratory/mixcr

MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

helicalAI/helical

A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.