#bioinformatics (30 Repositories)
Ranked open-source repositories tagged with #bioinformatics, scored by pull request acceptance likelihood and maintainer engagement velocity.
58.5%
65.8h
30 repositories tagged #bioinformatics
GuyTeichman/RNAlysis
Analyze your RNA sequencing data without writing a single line of code
cogent3/cogent3
Comparative Genomics Toolkit 3
FelixKrueger/Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
evo-design/proto-tools
A universal infrastructure layer for generative biology
omicverse/omicverse
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
stjude-rust-labs/sprocket
A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
BioArchLinux/Packages
Aim to be the bioinformatics repository with more and newer packages https://doi.org/10.1093/bioinformatics/btaf106
COMBINE-lab/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
bioconda/bioconda-recipes
Conda recipes for the bioconda channel.
vollgerlab/rustybam
bioinformatics toolkit in rust
genome-spy/genome-spy
A visualization grammar and GPU-accelerated toolkit for genomic data
satoshikawato/gbdraw
A genome diagram generator for microbes and organelles
scikit-bio/scikit-bio
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
broadinstitute/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
dockstore/dockstore
An app store for scientific workflows, tools, notebooks, and services
oncologylab/fp-tools
Command-first ATAC-seq footprinting, motif analysis, and reproducible interactive reports
pegasus-isi/pegasus
Pegasus Workflow Management System - Automate, recover, and debug scientific computations.
BioJulia/BioStructures.jl
A Julia package to read, write and manipulate macromolecular structures
plotly/Dash.jl
Dash for Julia - A Julia interface to the Dash ecosystem for creating analytic web applications in Julia. No JavaScript required.
rcedgar/usearch12
Open-source usearch
telatin/seqfu2
:rocket: seqfu - Sequece Fastx Utilities
fulcrumgenomics/fgbio
Tools for working with genomic and high throughput sequencing data.
mbhall88/rasusa
Randomly subsample sequencing reads or alignments
xuzhougeng/wisp-science
Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models.
biodatageeks/polars-bio
Blazing-Fast Bioinformatic Operations on Python DataFrames
nextflow-io/nextflow
A DSL for data-driven computational pipelines
galaxyproject/galaxy
Data intensive science for everyone.
samtools/htslib
C library for high-throughput sequencing data formats
biojava/biojava
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
arvados/arvados
An open source platform for managing and analyzing biomedical big data