#reproducible-research (30 Repositories)
Ranked open-source repositories tagged with #reproducible-research, scored by pull request acceptance likelihood and maintainer engagement velocity.
73.9%
41.2h
30 repositories tagged #reproducible-research
DIAGNijmegen/rse-grand-challenge
A platform for end-to-end development of machine learning solutions in biomedical imaging
aipoch/open-science
The open-source AI research workbench for scientific research and agent workflows. Local-first, model-agnostic desktop app with extensible skills, MCP tools and connectors, Python/R execution and traceable artifacts for reproducible research on macOS, Windows and Linux.
yuanzhw/AI-bioworkflow
Auditable bioinformatics workflow compiler: Catalog-bound planning, Workflow IR, and validated WDL 1.0.
xuzhougeng/wisp-science
Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models.
ropensci/rix
Reproducible Data Science environments for R with Nix
DeepMIMO/DeepMIMO
DeepMIMOv4: A Toolchain and Database for Ray-tracing Datasets.
DresdenGman/EPSILON-trading-simulator
Open-source quantitative decision lab: test market assumptions, preserve negative results, and reproduce evidence.
FloatingPragma/observer-patch-holography
Observer Patch Holography: finite observer consensus, machine-checked mathematics and reproducible models for reconstructing physical structure.
InsightSoftwareConsortium/ITK
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
hughjonesd/huxtable
An R package to create styled tables in multiple output formats, with a friendly, modern interface.
Cloud-CV/EvalAI
:cloud: :rocket: :bar_chart: :chart_with_upwards_trend: Evaluating state of the art in AI
OpenBioSim/biosimspace
An interoperable Python framework for biomolecular simulation.
ai4s-research/open-science
Open Science Desktop — local-first, model-agnostic AI research workbench for macOS, Windows & Linux. Open-source Claude Science desktop alternative built on Tauri + MCP + agent skills.
ddsjoberg/gtsummary
Presentation-Ready Data Summary and Analytic Result Tables
yihui/litedown
A lightweight version of R Markdown (without using Pandoc or knitr)
pytask-dev/pytask
pytask is a workflow management system that facilitates reproducible data analyses.
K-Dense-AI/science-superpowers
Composable computational-science methodology skills for AI research agents — pre-registration over TDD. A science-domain reimplementation of Superpowers.
reanahub/reana
REANA: Reusable research data analysis platform
logannye/rosalind
Reusable genomic evidence for research and analysis tools: exact read evidence, portable datasets, and managed analyzers.
showyourwork/showyourwork
A workflow for reproducible and open scientific articles
smileformylove/XScientist
Turn ideas into autonomous research with Git-like evidence histories—inspectable, reproducible, and reversible.
pipefunc/pipefunc
Lightweight fast function pipeline (DAG) creation in pure Python for scientific (HPC) workflows 🕸️🧪
tweag/funflow
Functional workflows
pedrohcgs/claude-code-my-workflow
A ready-to-fork Claude Code template for academics using LaTeX/Beamer + R. Multi-agent review, quality gates, adversarial QA, and replication protocols.
Rapporter/pander
An R Pandoc Writer: Convert arbitrary R objects into markdown
crsh/papaja
papaja (Preparing APA Journal Articles) is an R package that provides document formats to produce complete APA manuscripts from RMarkdown-files (PDF and Word documents) and helper functions that facilitate reporting statistics, tables, and plots.
superwesleyhys-ux/factcircuit
FactCircuit: an auditable claim-and-evidence verification loop with immutable provenance, staged checks, bounded retrieval, and reproducible evaluation.
limingrui679-design/high-stakes-analytics-decision-lab
A platform-neutral analytical Skill that profiles messy data, selects case-adaptive methods, and produces source-backed visual reports for high-stakes decisions.
IDSIA/sacred
Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.