#genomics (30 Repositories)
Ranked open-source repositories tagged with #genomics, scored by pull request acceptance likelihood and maintainer engagement velocity.
75.1%
55.2h
30 repositories tagged #genomics
galaxyproject/galaxy
Data intensive science for everyone.
ClawBio/ClawBio
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.
mixOmics-org/mixOmics
Development repository for the Bioconductor package 'mixOmics '
obophenotype/cell-ontology
An ontology of cell types
cogent3/cogent3
Comparative Genomics Toolkit 3
hail-is/hail
Cloud-native genomic dataframes and batch computing
HKU-BAL/Clair3
Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling
broadinstitute/gatk
Official code repository for GATK versions 4 and up
tanghaibao/jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
brentp/somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
vgteam/vg
tools for working with genome variation graphs
KarchinLab/open-cravat
A modular annotation tool for genomic variants
genomoncology/biomcp
BioMCP: Biomedical Model Context Protocol
vollgerlab/rustybam
bioinformatics toolkit in rust
samtools/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
biojava/biojava
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
GMOD/jbrowse-components
Source code for JBrowse 2, a modern React-based genome browser
biocommons/hgvs
Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature.org/).
projectglow/glow
An open-source toolkit for large-scale genomic analysis
biodatageeks/polars-bio
Blazing-Fast Bioinformatic Operations on Python DataFrames
thetahealth/mirobody
Turn scattered health data into answers you can trace. Self-hosted AI health data engine for lab reports, wearables and genetics, with a built-in MCP server. Run it with Docker and one LLM key, or keep every model local on llama.cpp.
broadinstitute/gatk-sv
A structural variation pipeline for short-read sequencing
aidenlab/juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
BenLangmead/bowtie2
A fast and sensitive gapped read aligner
logannye/rosalind
Reusable genomic evidence for research and analysis tools: exact read evidence, portable datasets, and managed analyzers.
biopython/biopython
Official git repository for Biopython (originally converted from CVS)
MariaNattestad/Ribbon
A genome browser designed for complex structural variants and long reads.
telatin/seqfu2
:rocket: seqfu - Sequece Fastx Utilities
KamilSJaron/smudgeplot
Inference of ploidy and heterozygosity structure using whole genome sequencing data
ncbi/amr
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.