#biology (27 Repositories)
Ranked open-source repositories tagged with #biology, scored by pull request acceptance likelihood and maintainer engagement velocity.
60.3%
89.6h
27 repositories tagged #biology
helicalAI/helical
A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
Revolutionary-Games/Thrive
The main repository for the development of the evolution game Thrive.
Opentrons/opentrons
Software for writing protocols and running them on the Opentrons Flex and Opentrons OT-2
epam/cloud-pipeline
Cloud agnostic genomics analysis, scientific computation and storage platform
aristoteleo/PantheonOS
A general, evolvable, and distributed agent framework & harness for data science.
SciML/Catalyst.jl
Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
cogent3/cogent3
Comparative Genomics Toolkit 3
astrnox/BioQuest
Your Complete Biology Study Companion — From Gaokao to Competition Level;高中生生物学习平台-高考到竞赛全链路学习方案
globalbioticinteractions/globalbioticinteractions
Global Biotic Interactions provides access to existing species interaction datasets
duerrsimon/bioicons
A library of free open source icons for science illustrations in biology and chemistry
rcedgar/muscle
Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
BioJulia/BioSequences.jl
Biological sequences for the julia language
GMOD/jbrowse
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
lmdu/pyfastx
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
ropensci/taxize
A taxonomic toolbelt for R
michaelhla/pro-1
reasoning model trained using GRPO towards rosetta REF2015 for protein stability
Pioreactor/pioreactor
Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.
BioJulia/BioStructures.jl
A Julia package to read, write and manipulate macromolecular structures
aipoch/medical-research-skills
Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.
BioDynaMo/biodynamo
BioDynaMo is a high-performance and modular, agent-based simulation platform.
Binomica-Labs/SpliceCraft
Terminal-based plasmid map viewer, sequence editor, and cloning/mutagenesis workbench in pure Python
deepchem/deepchem
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
Lattice-Automation/seqviz
a JavaScript DNA, RNA, and protein sequence viewer
upsidedownlabs/BioAmp-EXG-Pill
BioAmp EXG Pill is a small and elegant Analog Front End (AFE) board for BioPotential signal acquisition.
unum-science/USearchMolecules
Large Multi-Modal Chem-Informatics dataset of 7B+ molecules with fingerprints and 3D conformers for drug discovery
David-OConnor/molchanica
Protein and molecule viewer, editor, simulator
BioJulia/Bio.jl
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia