#transcriptomics (13 Repositories)
Ranked open-source repositories tagged with #transcriptomics, scored by pull request acceptance likelihood and maintainer engagement velocity.
57.0%
54.9h
13 repositories tagged #transcriptomics
GuyTeichman/RNAlysis
Analyze your RNA sequencing data without writing a single line of code
scverse/anndata
Annotated data.
obophenotype/cell-ontology
An ontology of cell types
scverse/scanpy
Single-cell analysis in Python. Scales to >100M cells.
COMBINE-lab/alevin-fry
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
scverse/decoupler
Python package to perform enrichment analysis from omics data.
ablab/IsoQuant
A universal toolkit for upstream processing of long RNA reads
GoekeLab/xpore
Identification of differential RNA modifications from nanopore direct RNA sequencing
iSEE/iSEE
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
lilab-bcb/cirrocumulus
Bring your single-cell data to life
GoekeLab/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
ZJUFanLab/scCATCH
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
aertslab/pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.