#dna (20 Repositories)
Ranked open-source repositories tagged with #dna, scored by pull request acceptance likelihood and maintainer engagement velocity.
50.9%
32.3h
20 repositories tagged #dna
FelixKrueger/Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
galaxyproject/galaxy
Data intensive science for everyone.
BnanZ0/ok-duet-night-abyss
二重螺旋 后台副本挂机 Automation for Duet Night Abyss
broadinstitute/gatk
Official code repository for GATK versions 4 and up
vgteam/vg
tools for working with genome variation graphs
samtools/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
ugeneunipro/ugene
UGENE is free open-source cross-platform bioinformatics software
biopython/biopython
Official git repository for Biopython (originally converted from CVS)
nextstrain/nextclade
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
mdshw5/pyfaidx
Efficient pythonic random access to fasta subsequences
apriha/lineage
tools for analyzing and exploring genetic relationships
lmdu/pyfastx
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
apriha/snps
tools for reading, writing, generating, merging, and remapping SNPs
ratschlab/metagraph
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
bebop/poly
A Go package for engineering organisms.
google/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Lattice-Automation/seqviz
a JavaScript DNA, RNA, and protein sequence viewer
dib-lab/khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
igordot/genomics
A collection of scripts and notes related to genomics and bioinformatics
BioJulia/Bio.jl
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia