#vcf (13 Repositories)
Ranked open-source repositories tagged with #vcf, scored by pull request acceptance likelihood and maintainer engagement velocity.
19.7%
23.0h
13 repositories tagged #vcf
samtools/htslib
C library for high-throughput sequencing data formats
hail-is/hail
Cloud-native genomic dataframes and batch computing
samtools/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
apriha/snps
tools for reading, writing, generating, merging, and remapping SNPs
tseemann/snippy
:scissors: :zap: Rapid haploid variant calling and core genome alignment
sigven/pcgr
Personal Cancer Genome Reporter (PCGR)
kcleal/gw
Genome browser and variant annotation
bioSyntax/bioSyntax
Syntax highlighting for computational biology
edgardomortiz/vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Illumina/hap.py
Haplotype VCF comparison tools
igordot/genomics
A collection of scripts and notes related to genomics and bioinformatics
fritzsedlazeck/SURVIVOR
Toolset for SV simulation, comparison and filtering
mskcc/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms