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#variant-calling (6 Repositories)
Ranked open-source repositories tagged with #variant-calling, scored by pull request acceptance likelihood and maintainer engagement velocity.
Topic Avg Merge Rate
56.3%
Avg Review Latency
1.1h
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6 repositories tagged #variant-calling
B TierPython 392
HKU-BAL/Clair3
Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling
75.0%
Merge Rate
1h
First Review
100%
1st-Timers
4
Maintainers
A TierPython 151
sequana/sequana
Sequana: a set of Snakemake NGS pipelines
72.7%
Merge Rate
<1h
First Review
50%
1st-Timers
2
Maintainers
A TierPython 932
tanghaibao/jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
90.0%
Merge Rate
5h
First Review
100%
1st-Timers
1
Maintainers
B TierC++ 124
gear-genomics/tracy
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
100.0%
Merge Rate
-
First Review
0%
1st-Timers
0
Maintainers
D TierPEPerl 594
tseemann/snippy
:scissors: :zap: Rapid haploid variant calling and core genome alignment
0.0%
Merge Rate
-
First Review
0%
1st-Timers
0
Maintainers
D TierC++ 327
luntergroup/octopus
Bayesian haplotype-based mutation calling
0.0%
Merge Rate
-
First Review
0%
1st-Timers
0
Maintainers