#spatial-transcriptomics (8 Repositories)
Ranked open-source repositories tagged with #spatial-transcriptomics, scored by pull request acceptance likelihood and maintainer engagement velocity.
24.0%
18.8h
8 repositories tagged #spatial-transcriptomics
aristoteleo/PantheonOS
A general, evolvable, and distributed agent framework & harness for data science.
scverse/squidpy
Spatial Single Cell Analysis in Python
dmcable/spacexr
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
prism-oncology/novae
Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many other features.
smorabit/hdWGCNA
High dimensional weighted gene co-expression network analysis
scverse/decoupler
Python package to perform enrichment analysis from omics data.
aristoteleo/spateo-release
Spatiotemporal modeling of spatial transcriptomics
kharchenkolab/numbat
Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome