#spatial-transcriptomics (10 Repositories)
Ranked open-source repositories tagged with #spatial-transcriptomics, scored by pull request acceptance likelihood and maintainer engagement velocity.
44.4%
38.8h
10 repositories tagged #spatial-transcriptomics
aristoteleo/PantheonOS
A general, evolvable, and distributed agent framework & harness for data science.
scverse/squidpy
Spatial Single Cell Analysis in Python
scverse/decoupler
Python package to perform enrichment analysis from omics data.
prism-oncology/novae
Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many other features.
TianGzlab/OmicsClaw
Conversational & memory-enabled AI research partner for multi-omics analysis. CLI + Desktop App (installers in Releases). From biological idea to full research paper.
dmcable/spacexr
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
smorabit/hdWGCNA
High dimensional weighted gene co-expression network analysis
kharchenkolab/numbat
Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome
aristoteleo/spateo-release
Spatiotemporal modeling of spatial transcriptomics
jinworks/CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics