#single-cell-rna-seq (17 Repositories)
Ranked open-source repositories tagged with #single-cell-rna-seq, scored by pull request acceptance likelihood and maintainer engagement velocity.
26.2%
60.0h
17 repositories tagged #single-cell-rna-seq
scverse/squidpy
Spatial Single Cell Analysis in Python
COMBINE-lab/alevin-fry
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
satijalab/seurat
R toolkit for single cell genomics
scverse/scvi-tools
Deep probabilistic analysis of single-cell and spatial omics data
saezlab/liana-py
LIANA+: an all-in-one framework for cell-cell communication
scverse/liana-py
LIANA+: an all-in-one framework for cell-cell communication
scRNA-tools/scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
xuranw/MuSiC
Multi-subject Single Cell Deconvolution
kharchenkolab/numbat
Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome
kharchenkolab/conos
R package for the joint analysis of multiple single-cell RNA-seq datasets
dtm2451/dittoSeq
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
enblacar/SCpubr
Generate high quality, publication ready visualizations for single cell transcriptomics data.
samuel-marsh/scCustomize
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
GregorySchwartz/too-many-cells
Cluster single cells and analyze cell clade relationships with colorful visualizations.
saeyslab/nichenetr
NicheNet: predict active ligand-target links between interacting cells
zhanghao-njmu/SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.