#sequencing (21 Repositories)
Ranked open-source repositories tagged with #sequencing, scored by pull request acceptance likelihood and maintainer engagement velocity.
44.3%
18.8h
21 repositories tagged #sequencing
galaxyproject/galaxy
Data intensive science for everyone.
broadinstitute/gatk
Official code repository for GATK versions 4 and up
ablab/spades
SPAdes Genome Assembler
samtools/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
xebia-functional/fetch
Simple & Efficient data access for Scala and Scala.js
ugeneunipro/ugene
UGENE is free open-source cross-platform bioinformatics software
biocommons/hgvs
Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature.org/).
milaboratory/mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
telatin/seqfu2
:rocket: seqfu - Sequece Fastx Utilities
gear-genomics/tracy
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
brentp/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
google/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
algbio/ggcat
Compacted and colored de Bruijn graph construction and querying
r3fang/SnapATAC
Analysis Pipeline for Single Cell ATAC-seq
ZJUFanLab/scCATCH
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
twbattaglia/RNAseq-workflow
A repository for setting up a RNAseq workflow
igordot/genomics
A collection of scripts and notes related to genomics and bioinformatics
sanger-pathogens/Roary
Rapid large-scale prokaryote pan genome analysis
tobiasrausch/alfred
BAM Statistics, Feature Counting and Annotation
bitfieldaudio/OTTO
Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]