#sequence-alignment (13 Repositories)
Ranked open-source repositories tagged with #sequence-alignment, scored by pull request acceptance likelihood and maintainer engagement velocity.
28.9%
59.2h
13 repositories tagged #sequence-alignment
scikit-bio/scikit-bio
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
biojava/biojava
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
bbuchfink/diamond
Accelerated BLAST compatible local sequence aligner.
biopython/biopython
Official git repository for Biopython (originally converted from CVS)
shenwei356/LexicMap
LexicMap: efficient sequence alignment against millions of prokaryotic genomes
lh3/minibwa
Successor of bwa-mem for short-read alignment
lh3/minigraph
Sequence-to-graph mapper and graph generator
torognes/vsearch
Versatile open-source tool for microbiome analysis
lh3/miniprot
Align proteins to genomes with splicing and frameshift
seqan/seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
lh3/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
lh3/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
bwa-mem2/bwa-mem2
The next version of bwa-mem