#scrna-seq (14 Repositories)
Ranked open-source repositories tagged with #scrna-seq, scored by pull request acceptance likelihood and maintainer engagement velocity.
27.5%
62.0h
14 repositories tagged #scrna-seq
COMBINE-lab/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
scverse/scvi-tools
Deep probabilistic analysis of single-cell and spatial omics data
junjunlab/scRNAtoolVis
Useful functions to make your scRNA-seq plot more cool!
scRNA-tools/scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
scverse/muon
muon is a multimodal omics Python framework
lilab-bcb/cirrocumulus
Bring your single-cell data to life
theislab/zellkonverter
Conversion between scRNA-seq objects
liulab-dfci/MAESTRO
Single-cell Transcriptome and Regulome Analysis Pipeline
Oshlack/splatter
Simple simulation of single-cell RNA sequencing data
kharchenkolab/conos
R package for the joint analysis of multiple single-cell RNA-seq datasets
samuel-marsh/scCustomize
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
zhanghao-njmu/SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
immunogenomics/harmony
Fast, sensitive and accurate integration of single-cell data with Harmony
mdozmorov/scRNA-seq_notes
A list of scRNA-seq analysis tools