#metagenomics (15 Repositories)
Ranked open-source repositories tagged with #metagenomics, scored by pull request acceptance likelihood and maintainer engagement velocity.
38.3%
14.8h
15 repositories tagged #metagenomics
merenlab/anvio
An analysis and visualization platform for 'omics data
galaxyproject/training-material
A collection of Galaxy-related training material
scikit-bio/scikit-bio
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
soedinglab/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
gbouras13/pharokka
Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.
BigDataBiology/SemiBin
SemiBin: metagenomics binning with self-supervised deep learning
bluenote-1577/skani
Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale database searches.
steineggerlab/Metabuli
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
ratschlab/metagraph
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
torognes/vsearch
Versatile open-source tool for microbiome analysis
cafferychen777/ggpicrust2
Make Picrust2 Output Analysis and Visualization Easier
yiluheihei/microbiomeMarker
R package for microbiome biomarker discovery
bioinformatics-centre/kaiju
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
bluenote-1577/sylph
ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
benjjneb/dada2
Accurate sample inference from amplicon data with single nucleotide resolution