#genome (15 Repositories)
Ranked open-source repositories tagged with #genome, scored by pull request acceptance likelihood and maintainer engagement velocity.
49.2%
19.1h
15 repositories tagged #genome
broadinstitute/gatk
Official code repository for GATK versions 4 and up
pirovc/genome_updater
genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with advanced filters, detailed logs and reports, file integrity checks, NCBI taxonomy and GTDB integration and support for parallel downloads.
genome-spy/genome-spy
A visualization grammar and GPU-accelerated toolkit for genomic data
MariaNattestad/Ribbon
A genome browser designed for complex structural variants and long reads.
Gaius-Augustus/Augustus
Genome annotation with AUGUSTUS
lmdu/pyfastx
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
BirolLab/abyss
:microscope: Assemble large genomes using short reads
brentp/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
DECIPHER-genomics/Genoverse
HTML5 scrollable genome browser
XMU-Kuangnan-Fang-Team/GENetLib
A Python library for Gene–environment interaction analysis via deep learning
google/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
bernatgel/karyoploteR
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
genometools/genometools
GenomeTools genome analysis system.
ropensci/biomartr
Genomic Data Retrieval with R
primaryobjects/AI-Programmer
Using artificial intelligence and genetic algorithms to automatically write programs. Tutorial: http://www.primaryobjects.com/cms/article149