#computational-biology (23 Repositories)
Ranked open-source repositories tagged with #computational-biology, scored by pull request acceptance likelihood and maintainer engagement velocity.
50.7%
31.0h
23 repositories tagged #computational-biology
xuzhougeng/wisp-science
Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models.
Chaste/Chaste
Chaste - Cancer Heart And Soft Tissue Environment - main public repository.
opensim-org/opensim-core
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
scverse/pertpy
Single-cell perturbation analysis
inoue0426/awesome-computational-biology
Awesome list of computational biology.
HKU-BAL/Clair3
Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling
scikit-bio/scikit-bio
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
OpenBioSim/biosimspace
An interoperable Python framework for biomolecular simulation.
RMeli/spyrmsd
📐 Symmetry-corrected RMSD in Python
biotite-dev/biotite
A comprehensive library for computational molecular biology
opencobra/cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
rcedgar/usearch12
Open-source usearch
cafferychen777/mLLMCelltype
Cell type annotation for single-cell RNA-seq using multi-LLM consensus
moritztng/tt-bio
Protein structure prediction, binding affinity, protein design and protein language models on Tenstorrent Blackhole and Wormhole hardware, from one card to a Galaxy server.
aipoch/medical-research-skills
Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.
oncologylab/craftgrn
Combined RNA and ATAC Footprint Training of Gene Regulatory Network
VerisimilitudeX/DNAnalyzer
Precision genomics for everyone, everywhere. Powered by private AI.
bebop/poly
A Go package for engineering organisms.
OATML-Markslab/ProteinGym
Official repository for the ProteinGym benchmarks
Rockman6/CellSim-3D-Multicellular-Biology-Drug-Testing-Simulator
Physics-first, uncertainty-honest in-silico cell and drug-response simulator (Python). Validated docking/ADMET input layer (Vina, OpenFF, xTB), cell-level PK/PD modules, and a cell/colony engine under construction toward a validated interactive dish.
bioSyntax/bioSyntax
Syntax highlighting for computational biology
eselkin/awesome-computational-neuroscience
A list of schools and researchers in computational neuroscience
aaryansamanta/ai-research-publications
High-school research portfolio: 2 peer-reviewed publications (IEEE, IJHSR) + 3 active projects spanning quantum-inspired ML, computational biology, biomedical imaging, wildfire RL, and science-education research. Stanford Medicine, UCLA COSMOS & UCSB SRA affiliated.